barplot(height, ...)
"barplot"(height, type = "count", sampleColour.top = NULL, sampleColour.bot = NULL, legend = TRUE, pValue = TRUE, strand = "*", testValue = NULL, testValue2 = NULL, OrgDb = NULL, TxDb = NULL, annotationType = c("gene", "exon", "transcript"), main = NULL, ylim = NULL, yaxis = TRUE, xaxis = FALSE, ylab = TRUE, ylab.text = NULL, xlab.text = "samples", xlab = TRUE, legend.colnames = "", las.ylab = 1, las.xlab = 2, cex.main = 1, cex.pValue = 0.7, cex.ylab = 0.7, cex.xlab = 0.7, cex.legend = 0.6, add = FALSE, lowerLeftCorner = c(0, 0), size = c(1, 1), addHorizontalLine = 0.5, add.frame = TRUE, filter.pValue.fraction = 0.99, legend.fill.size = 1, legend.interspace = 1, verbose = FALSE, top.fraction.criteria = "maxcount", cex.annotation = 0.7, ypos.annotation = 0, annotation.interspace = 1, ...)
ASEset
objectboolean
indicates if a new device should be startedadd
=TRUEboolean
to give the new plot a frame or notnumeric
between 0 and 1 that filter
away pValues where the main allele has this frequency.filter.pValue.fraction
is intended to remove p-value annotation with
very large difference in frequency, which could just be a sequencing
mistake. This is to avoid p-values like 1e-235 or similar.sampleColour
User specified colours, either given as named colours
('red', 'blue', etc) or as hexadecimal code. Can be either length 1 for all
samples, or else of a length corresponding to the number of samples for
individual colouring.
ASEset
class which the barplot
function can be called up on.
data(ASEset)
barplot(ASEset[1])
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