Arguments
eset
An object derived from class eSet
,
e.g. an NChannelSet
element
A character string corresponding to the assayDataElementName of the 'eset' object to which the thresholds should be applied.
lower
The lower threshold. If not 'NULL', genes with a score
smaller than 'lower' will be included in the gene set with sign
-1. At least one of 'lower' and 'higher' must be specified.
higher
The 'higher' threshold. If not 'NULL', genes with a score
larger than 'higher' will be included in the gene set with sign
+1. At least one of 'lower' and 'higher' must be specified.
sign.sets
Logical, indicating whether the 'signed' slot of the generated
CMAPCollection should be set to 'TRUE' or 'FALSE'. This parameter
should be set to 'FALSE' when the 'element' does not contain
information about directionality, e.g. if it is a p-value.
...
Any of the additional arguments detailed above.