This function is vectorised so you can install multiple packages in a single command.
install_bitbucket(
repo,
ref = "HEAD",
subdir = NULL,
auth_user = bitbucket_user(),
password = bitbucket_password(),
host = "api.bitbucket.org/2.0",
dependencies = NA,
upgrade = c("default", "ask", "always", "never"),
force = FALSE,
quiet = FALSE,
build = TRUE,
build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes"),
build_manual = FALSE,
build_vignettes = FALSE,
repos = getOption("repos"),
type = getOption("pkgType"),
...
)
Repository address in the format
username/repo[/subdir][@ref]
. Alternatively, you can
specify subdir
and/or ref
using the respective parameters
(see below); if both are specified, the values in repo
take
precedence.
Desired git reference; could be a commit, tag, or branch name. Defaults to HEAD.
subdirectory within repo that contains the R package.
your account username if you're attempting to install
a package hosted in a private repository (and your username is different
to username
). Defaults to the BITBUCKET_USER
environment
variable.
your password. Defaults to the BITBUCKET_PASSWORD
environment variable. See details for further information on setting
up a password.
GitHub API host to use. Override with your GitHub enterprise
hostname, for example, "github.hostname.com/api/v3"
.
Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector.
TRUE
is shorthand for "Depends", "Imports", "LinkingTo" and
"Suggests". NA
is shorthand for "Depends", "Imports" and "LinkingTo"
and is the default. FALSE
is shorthand for no dependencies (i.e.
just check this package, not its dependencies).
The value "soft" means the same as TRUE
, "hard" means the same as NA
.
You can also specify dependencies from one or more additional fields, common ones include:
Config/Needs/website - for dependencies used in building the pkgdown site.
Config/Needs/coverage for dependencies used in calculating test coverage.
One of "default", "ask", "always", or "never". "default"
respects the value of the R_REMOTES_UPGRADE
environment variable if set,
and falls back to "ask" if unset. "ask" prompts the user for which out of
date packages to upgrade. For non-interactive sessions "ask" is equivalent
to "always". TRUE
and FALSE
are also accepted and correspond to
"always" and "never" respectively.
Force installation, even if the remote state has not changed since the previous install.
If TRUE
, suppress output.
If TRUE
build the package before installing.
Options to pass to R CMD build
, only used when build
If FALSE
, don't build PDF manual ('--no-manual').
If FALSE
, don't build package vignettes ('--no-build-vignettes').
is TRUE
.
A character vector giving repositories to use.
Type of package to update
.
Other arguments passed on to utils::install.packages()
.
To install from a private repo, or more generally, access the
Bitbucket API with your own credentials, you will need to get an access
token. You can create an access token following the instructions found in
the
Bitbucket
App Passwords documentation. The App Password requires read-only access to
your repositories and pull requests. Then store your password in the
environment variable BITBUCKET_PASSWORD
(e.g. evelynwaugh:swordofhonour
)
Note that on Windows, authentication requires the "libcurl" download
method. You can set the default download method via the
download.file.method
option:
options(download.file.method = "libcurl")
In particular, if unset, RStudio sets the download method to "wininet".
To override this, you might want to set it to "libcurl" in your
R profile, see base::Startup. The caveat of the "libcurl" method is
that it does not set the system proxies automatically, see
"Setting Proxies" in utils::download.file()
.
Bitbucket API docs: https://confluence.atlassian.com/bitbucket/use-the-bitbucket-cloud-rest-apis-222724129.html
Other package installation:
install_bioc()
,
install_cran()
,
install_dev()
,
install_github()
,
install_gitlab()
,
install_git()
,
install_local()
,
install_svn()
,
install_url()
,
install_version()
# NOT RUN {
install_bitbucket("sulab/mygene.r@default")
install_bitbucket("djnavarro/lsr")
# }
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