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monitoR (version 1.2)

Acoustic Template Detection in R

Description

Acoustic template detection and monitoring database interface. Create, modify, save, and use templates for detection of animal vocalizations. View, verify, and extract results. Upload a MySQL schema to a existing instance, manage survey metadata, write and read templates and detections locally or to the database.

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Version

Install

install.packages('monitoR')

Monthly Downloads

593

Version

1.2

License

GPL-2

Issues

17

Pull Requests

0

Stars

5

Forks

0

Maintainer

Sasha D. Hafner

Last Published

April 11th, 2025

Functions in monitoR (1.2)

changeSampRate

Resample Wave objects
TemplateList-class

Class "TemplateList"
btnw

Black-Throated Green Warbler (Setophaga virens) Song
compareTemplates

Compare Performance of Templates
Template-class

Class "Template"
bindEvents

Summarize/Archive Manually Derived Sound Events
combineTemplates

Combine Acoustic Template Lists
cutWave

Extract Shorter Wave Objects from other Wave Objects
batchDetection

Batch Template Detection
detectionList-class

Class "detectionList"
collapseClips

Summarize/Archive Song Events
eventEval

Evaluate Detected Events with Known Event Sources and Times
dbDownload

Retrieve Card-Recorder ID Values or Survey Names from a Database
dbDownloadResult

Create detectionList Objects from Data Stored in a Database
dbUploadAnno

Upload Spectrogram Annotations to an Acoustics Database
dbDownloadTemplate

Retrieve templates from an acoustics database
dbUploadSurvey

Upload Survey Metadata to an Acoustics Database
dbUploadTemplate

Upload Acoustic Templates to a Database
dbUploadResult

Upload Detection Results to an Acoustics Database
dbSchema

Upload a MySQL Database Schema to Create Tables in an Acoustics Database
getDetections

Extract Detections or Peaks from a detectionList Object
extract-methods

Indexing (Extraction) Methods for monitoR Package
fileCopyRename

Copy and Rename Sound Files from Portable Media
oven

Ovenbird (Seiurus aurocapilla) Song
getTemplates

Extract a Template List
findPeaks

Find Score Peaks and Detections in a templateScores Object
mp3Subsamp

Extract Short Surveys from Longer mp3 Recordings
internals

monitoR Internal Functions
survey

Sample Acoustic Survey (Short)
specCols

Color Vectors for Spectrograms
makeTemplate

Make an Acoustic Template
show-methods

Methods for the show and summary Functions
monitoR

Automated Acoustic Monitoring--overview and examples
showPeaks

View or Verify Detections or Peaks
plot-methods

Methods for the plot Function
templateComment

Query or Set Template Cutoffs
readTemplates

Read Acoustic Templates from a Local Disk
survey_anno

Annotations for survey
timeAlign

Condense Detections or Peaks from Multiple Templates
readMP3

Read MP3 Files into a Wave Object
templatePath

Song clip path of Templates
templateScores-class

Class "templateScores"
templateCutoff

Query or Set Template Cutoffs
viewSpec

Interactively View and Annotate Spectrograms
writeTemplates

Write Acoustic Templates to Text Files
templateMatching

Calculate Spectrogram Template Matching Scores
templateNames

Names of Templates