ROntoTools (version 2.0.0)

keggPathwayNames: Obtain KEGG pathway titles

Description

Obtain KEGG pathway titles

Usage

keggPathwayNames(organism = "hsa", updateCache = FALSE, verbose = TRUE)

Arguments

organism

organism code as defined by KEGG

updateCache

re-download KEGG data

verbose

show progress of downloading and parsing

Value

A named vector of pathway titles. The names of the vector are the pathway KEGG IDs.

See Also

keggPathwayGraphs

Examples

kpn <- keggPathwayNames("hsa")

# to update the pathway cache for human run:
# kpn <- keggPathwayNames("hsa", updateCache = TRUE)
# this is time consuming and depends on the available bandwidth.

head(kpn)