<!-- % not run because (1) slow (2) writes output file -->
## Not run: ------------------------------------
#
# ## from a capthist object, specifying almost everything
# mask.check (possumCH, spacings = c(20, 30), buffers =c(200, 300),
# realpar = list(g0 = 0.2, sigma = 50), CL = TRUE)
#
# ## from a fitted model, using defaults
# mask.check (stoat.model.HN)
# ## LL did not change with varying buffer (rows) or spacing (cols):
# ## 78.125 58.59375 39.0625
# ## 1000 -144.0015 -144.0015 -144.0015
# ## 1500 -144.0017 -144.0017 -144.0017
# ## 2000 -144.0017 -144.0017 -144.0017
#
# ## fit new models for each combination of buffer & spacing,
# ## and save fitted models to a file
# mask.check (stoat.model.HN, buffers = 1500, spacings =
# c(40,60,80), LLonly = FALSE, file = "test", CL = TRUE)
#
# ## look in more detail at the preceding fits
# ## restores objects `mask.check.output' and `mask.check.fit'
# load("test.RData")
# lapply(mask.check.fit, predict)
# lapply(mask.check.fit, derived)
#
# ## multi-session data
# mask.check(ovenbird.model.1, session = c("2005","2009"))
#
# ## clipping mask
# olddir <- setwd(system.file("extdata", package = "secr"))
# possumarea <- read.table("possumarea.txt", header = TRUE)
# setwd(olddir)
# data (possum)
# mask.check (possum.model.0, spacings = c(20, 30), buffers =
# c(200, 300), poly = possumarea, LLonly = FALSE,
# file = "temp", CL = TRUE)
#
# ## review fitted models
# load ("temp.RData")
# par(mfrow = c(2,2), mar = c(1,4,4,4))
# for (i in 1:4) {
# plot(traps(mask.check.fit[[i]]$capthist), border = 300,
# gridlines = FALSE)
# plot(mask.check.fit[[i]]$mask, add = TRUE)
# lines(possumarea)
# text ( 2698618, 6078427, names(mask.check.fit)[i])
# box()
# }
# par(mfrow = c(1,1), mar = c(5,4,4,2) + 0.1) ## defaults
#
## ---------------------------------------------
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