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phangorn (version 0.0-2)

Phylogenetic analysis in R

Description

Phylogenetic analysis in R (Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, Distance methods & Hadamard conjugation)

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Version

Install

install.packages('phangorn')

Monthly Downloads

21,468

Version

0.0-2

License

GPL (>=2)

Maintainer

Klaus Schliep

Last Published

September 17th, 2024

Functions in phangorn (0.0-2)

upgma

UPGMA
treedist

Distances between trees
phyDat

Conversion amoung Sequence Formats
pml

Likelihood of a tree.
parsimony

Parsimony tree.
distanceHadamard

Distance Hadamard
dist.hamming

Pairwise Distances from Sequences
Laurasiatherian

Laurasiatherian data (AWCMEE)
NJ

Neighbor-Joining
dfactorial

Arithmetic Operators
hadamard

Hadamard Matrices and Fast Hadamard Multiplication