mrbayes.prset

arguments in <code>tag = value</code> form, or a list of tagged values. The tags must come from the names of prior distribution parameters described in the &lt;U+2018&gt;Prior Distribution Parameters&lt;U+2019&gt; section.

&#8230;

Set prior distributions for <code><a rd-options="" href="/link/mrbayes?package=ips&version=0.0.11" data-mini-rdoc="ips::mrbayes">mrbayes</a></code>.

Functions that wrap popular phylogenetic software for sequence
alignment, masking of sequence alignments, and estimation of phylogenies and
ancestral character states.

Christoph Heibl

Interfaces to Phylogenetic Software in R

Natalie Cusimano

Franz-Sebastian Krah

mrbayes.prset function

<dl class="dl-horizontal">
 <dt>traitiopr</dt><dd></dd>
 <dt>revmatpr</dt><dd></dd>
 <dt>aamodelpr</dt><dd></dd>
 <dt>aarevmatpr</dt><dd></dd>
 <dt>omegapr</dt><dd></dd>
 <dt>ny98omega1pr</dt><dd></dd>
 <dt>ny98omega3pr</dt><dd></dd>
 <dt>m3omegapr</dt><dd></dd>
 <dt>codoncatfreqs</dt><dd></dd>
 <dt>statefreqpr</dt><dd></dd>
 <dt>shapepr</dt><dd></dd>
 <dt>ratecorrpr</dt><dd></dd>
 <dt>pinvarpr</dt><dd></dd>
 <dt>covswitchpr</dt><dd></dd>
 <dt>symdirihyperpr</dt><dd></dd>
 <dt>topologypr</dt><dd></dd>
 <dt>brlenspr</dt><dd></dd>
 <dt>clockvarpr</dt><dd></dd>
 <dt>igrvarpr</dt><dd></dd>
 </dl>

Prior Distribution Parameters

Set prior distributions for <code><a rd-options='' href='mrbayes'>mrbayes</a></code>.

Set Priors for MrBayes — mrbayes.prset

<dl class='dl-horizontal'>
 <dt>traitiopr</dt><dd></dd>
 <dt>revmatpr</dt><dd></dd>
 <dt>aamodelpr</dt><dd></dd>
 <dt>aarevmatpr</dt><dd></dd>
 <dt>omegapr</dt><dd></dd>
 <dt>ny98omega1pr</dt><dd></dd>
 <dt>ny98omega3pr</dt><dd></dd>
 <dt>m3omegapr</dt><dd></dd>
 <dt>codoncatfreqs</dt><dd></dd>
 <dt>statefreqpr</dt><dd></dd>
 <dt>shapepr</dt><dd></dd>
 <dt>ratecorrpr</dt><dd></dd>
 <dt>pinvarpr</dt><dd></dd>
 <dt>covswitchpr</dt><dd></dd>
 <dt>symdirihyperpr</dt><dd></dd>
 <dt>topologypr</dt><dd></dd>
 <dt>brlenspr</dt><dd></dd>
 <dt>clockvarpr</dt><dd></dd>
 <dt>igrvarpr</dt><dd></dd>
 </dl>

mrbayes.prset: Set Priors for MrBayes

Description

Usage

Arguments

Value

Prior Distribution Parameters

References

See Also

Examples