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BiocGenerics (version 0.18.0)

S4 generic functions for Bioconductor

Description

S4 generic functions needed by many Bioconductor packages.

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Version

Version

0.18.0

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in BiocGenerics (0.18.0)

annotation

Accessing annotation information
append

Append elements to a vector-like object
boxplot

Box plots
IQR

The Interquartile Range
evalq

Evaluate an (unevaluated) expression
dge

Accessors and generic functions used in the context of count datasets
tapply

Apply a function over a ragged array
score

Score accessor
S3-classes-as-S4-classes

S3 classes as S4 classes
plotPCA

PCA-plot: Principal Component Analysis plot
rep

Replicate elements of a vector-like object
subset

Subsetting vector-like, matrix-like and data-frame-like objects
nrow

The number of rows/columns of an array-like object
cbind

Combine objects by rows or columns
organism_species

Organism and species accessors
paste

Concatenate strings
unique

Extract unique elements
duplicated

Determine duplicate elements
plotMA

MA-plot: plot differences versus averages for high-throughput data
do.call

Execute a function call
get

Return the value of a named object
image

Display a color image
normalize

Normalize an object
combine

Combining or merging different Bioconductor data structures
testPackage

Run RUnit package unit tests
start

Start, end, width generic getters and setters
sort

Sorting a vector-like object
table

Cross tabulation and table creation
as.vector

Coerce an object into a vector
match

Value matching
BiocGenerics-package

S4 generic functions for Bioconductor
density

Kernel density estimation
clusterApply

Apply operations using clusters
grep

Pattern Matching and Replacement
order

Ordering permutation
strand

Accessing strand information
weights

Extract model weights
sets

Set operations
eval

Evaluate an (unevaluated) expression
Extremes

Maxima and minima
xtabs

Cross tabulation
lengths

Lengths of the list elements of a list-like object
relist

Re-listing an unlist()ed object
rank

Ranks the values in a vector-like object
updateObject

Update an object to its current class definition
residuals

Extract model residuals
as.data.frame

Coerce an object into a data frame
lapply

Apply a function over a list-like or vector-like object
row+colnames

Row and column names
funprog

Common higher-order functions in functional programming languages
unsplit

Unsplit a list-like object
mad

Median Absolute Deviation
is.unsorted

Test if a vector-like object is not sorted
mapply

Apply a function to multiple list-like or vector-like arguments
unlist

Flatten list-like objects
fileName

Accessing the file name of an object
dbconn

Accessing SQLite DB information