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Epidynamics

Currently, the R package EpiDynamics implements the computer programs written in other programming languages and available in the web page of the book referenced below:

Keeling, M.J. and Rohani, P. (2007) Modeling Infectious Diseases in Humans and Animals. Princeton University Press.

The EpiDynamics' functions corresponding to the programs of the book are based on the Python versions written by Ilias Soumpasis.

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Version

Install

install.packages('EpiDynamics')

Monthly Downloads

192

Version

0.3.1

License

GPL (>= 2)

Issues

0

Pull Requests

0

Stars

29

Forks

11

Maintainer

Oswaldo Santos Baquero

Last Published

February 13th, 2020

Functions in EpiDynamics (0.3.1)

SEIRnStages

SEIR model with n stages (P 3.5).
SIRCarrierState

SIR model with carrier state (2.7).
SIRPartialImmunity

SIR model with partial immunity (P 4.1).
SIRInducedMortality2

SIR model with disease induced mortality: frequency-dependent transmission (P 2.4).
SIRInducedMortality

SIR model with disease induced mortality: Density-dependent transmission (P 2.3).
SIRDemogStoch

SIR model with demographic stochasticity (P 6.4).
SIRBirthDeath

SIR model with births and deaths (P 2.2).
SIRScaledAdditiveNoise

SIR model with Scaled additive noise (P 6.2).
SIRSinusoidalBirth

SIR model with sinusoidal births (P 5.3).
SIRSinusoidalForcing

SIR model with sinusoidal forcing (P 5.1).
SIRTauLeap

SIR model with tau leap method (P 6.5).
SIRTermTimeForcing

SIR model with corrected term-time forcing (P 5.2).
SISinusoidalTransmBrith

Rabbit Hemorrhagic Disease model with sinusoidal transmission rate and per capita birth rate (P 5.4).
SISnRiskGroups

SIS model with multiple risk groups (P 3.2).
SIS2RiskGroups

SIS model with 2 risk groups (P 3.1).
SIS

Simple SIS model (P 2.5).
sir2AgeClasses

SIR model with 2 age classes (P 3.3).
SIRVector

SIR model for mosquito vectors (P 4.4).
SISPairwiseApprox

Pairwise SIS approximation model (P 7.8).
SISDemogStoch

SIS model with demographic stochasticity (P 6.3).
SIR2TypesImports

SIR model with two types of imports (P 6.6).
SEIR

SEIR model (2.6).
MultiStrainPartialImmunity

Partial immunity model that cycles (P 4.2).
SEIR4AgeClasses

SEIR model with 4 age classes and yearly aging (P 3.4).
PlotMods

Plot results of capm model functions
SIRAdditiveNoise

SIR model with constant additive noise (P 6.1).
SIR

Simple SIR model (P 2.1).
EpiDynamics-package

The EpiDynamics Package
SIR2Stages

SIR model with 2 age classes (P 3.3).