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vegan (version 1.8-1)
Community Ecology Package
Description
Ordination methods and other useful functions for community and vegetation ecologists.
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Install
install.packages('vegan')
Monthly Downloads
121,787
Version
1.8-1
License
GPL2
Maintainer
Jari Oksanen
Last Published
January 29th, 2025
Functions in vegan (1.8-1)
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anosim
Analysis of Similarities
ordiplot
Alternative plot and identify Functions for Ordination
make.cepnames
Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name
mite
Oribatid Mite Data with Explanatory Variables
radfit
Rank -- Abundance or Dominance / Diversity Models
specpool
Extrapolated Species Richness in a Species Pool
goodness.cca
Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
scores
Get Species or Site Scores from an Ordination
cca
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
BCI
Barro Colorado Island Tree Counts
procrustes
Procrustes Rotation of Two Configurations
read.cep
Reads a CEP (Canoco) data file
ordiplot3d
Three-Dimensional and Dynamic Ordination Graphics
anova.cca
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
varpart
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices
goodness.metaMDS
Goodness of Fit and Shepard Plot for Nonmetric Multidimensional Scaling
decorana
Detrended Correspondence Analysis and Basic Reciprocal Averaging
dune
Vegetation and Environment in Dutch Dune Meadows.
ordihull
Add Graphical Items to Ordination Diagrams
vegan-internal
Internal vegan functions
metaMDS
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores
specaccum
Species Accumulation Curves
deviance.cca
Statistics Resembling Deviance and AIC for Constrained Ordination
envfit
Fits an Environmental Vector or Factor onto an Ordination
vegdist
Dissimilarity Indices for Community Ecologists
distconnected
Connectedness of Dissimilarities
fisherfit
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data
decostand
Standardizaton Methods for Community Ecology
rankindex
Compares Dissimilarity Indices for Gradient Detection
vegandocs
Display Package Documentation
mrpp
Multi Response Permutation Procedure of Within- versus Among-Group Dissimilarities
bioenv
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities
wascores
Weighted Averages Scores for Species
cca.object
Result Object from Constrained Ordination with cca, rda or capscale
varespec
Vegetation and environment in lichen pastures
diversity
Ecological Diversity Indices and Rarefaction Species Richness
beals
Beals Smoothing of Community Data
pyrifos
Response of Aquatic Invertebrates to Insecticide Treatment
linestack
Plots One-dimensional Diagrams without Overwriting Labels
mantel
Mantel and Partial Mantel Tests for Dissimilarity Matrices
humpfit
No-interaction Model for Hump-backed Species Richness vs. Biomass
prc
Principal Response Curves for Treatments with Repeated Observations
spantree
Minimum Spanning Tree
predict.cca
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
plot.cca
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
vegemite
Prints a Compact, Ordered Vegetation Table
capscale
[Partial] Constrained Analysis of Principal Coordinates or distance-based RDA
ordisurf
Fit and Plot Smooth Surfaces of Variables on Ordination.
stepacross
Stepacross as Flexible Shortest Paths or Extended Dissimilarities
orditorp
Add Text or Points to Ordination Plots