autoStopCluster

Sub-function to auto-stop the clusters created for parallel processes

internal

The accurate annotation of genes and Quantitative Trait Loci (QTLs) located within candidate markers and/or regions (haplotypes, windows, CNVs, etc) is a crucial step the most common genomic analyses performed in livestock, such as Genome-Wide Association Studies or transcriptomics. The Genomic Annotation in Livestock for positional candidate LOci (GALLO) is an R package designed to provide an intuitive and straightforward environment to annotate positional candidate genes and QTLs from high-throughput genetic studies in livestock. Moreover, GALLO allows the graphical visualization of gene and QTL annotation results, data comparison among different grouping factors (e.g., methods, breeds, tissues, statistical models, studies, etc.), and QTL enrichment in different livestock species including cattle, pigs, sheep, and chicken, among others.

Pablo Fonseca

GALLO

Genomic Annotation in Livestock for Positional Candidate LOci

Aroa Suarez-Vega

Gabriele Marras

Angela Cánovas

autoStopCluster function

<dl><dt>cl</dt>
<dd>The cluster created by the makePSOCKcluster function</dd></dl>

Arguments

Sub-function to auto-stop the clusters created for parallel processes — autoStopCluster

<dl>

<dt>cl</dt>
<dd>The cluster created by the makePSOCKcluster function</dd>

</dl>

autoStopCluster: Sub-function to auto-stop the clusters created for parallel processes

Description

Usage

Arguments