parseKGML2Graph

file

 other parameters passed to KEGGpathway2Graph, see
    <code><a rd-options="" href="/link/KEGGpathway2Graph?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGpathway2Graph">KEGGpathway2Graph</a></code> 


  This function is a wrapper for parseKGML and KEGGpathway2Graph. It
  takes two actions: first it reads in the KGML file and parses it into an object of
  <code><a rd-options="" href="/link/KEGGPathway-class?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGPathway-class">KEGGPathway-class</a></code>, the second step it calls
  <code><a rd-options="" href="/link/KEGGpathway2Graph?package=KEGGgraph&version=1.30.0" data-mini-rdoc="KEGGgraph::KEGGpathway2Graph">KEGGpathway2Graph</a></code> function to return the graph model.


KEGGGraph is an interface between KEGG pathway and graph
object as well as a collection of tools to analyze, dissect and
visualize these graphs. It parses the regularly updated KGML
(KEGG XML) files into graph models maintaining all essential
pathway attributes. The package offers functionalities
including parsing, graph operation, visualization and etc.

Jitao David Zhang

KEGGgraph

KEGGgraph: A graph approach to KEGG PATHWAY in R and
Bioconductor

parseKGML2Graph function

other parameters passed to KEGGpathway2Graph, see
    <code><a href="KEGGpathway2Graph" rd-options="">KEGGpathway2Graph</a></code>

This function is a wrapper for parseKGML and KEGGpathway2Graph. It
  takes two actions: first it reads in the KGML file and parses it into an object of
  <code><a href="KEGGPathway-class" rd-options="">KEGGPathway-class</a></code>, the second step it calls
  <code><a href="KEGGpathway2Graph" rd-options="">KEGGpathway2Graph</a></code> function to return the graph model.

parseKGML2Graph: Parse KGML files into KEGG graph

Description

Usage

Arguments

Value

Details

Examples