phylotools (version 0.1.2)

phylocom.pd: Calculate phylogenetic diversity using Phylocom

Description

This is a wrapper function of phylocom for Calculate phylogenetic diversity using Phylocom

Usage

phylocom.pd(sample = "sample", phylo = "phylo")

Arguments

sample

Character string, the name of the sample file used in Phylocom

phylo

Character string, the name of the "phylo" file used in Phylocom

Value

PD data frame

References

Campbell Webb, David Ackerly, Steve Kembel (2010) Phylocom software for the analysis of phylogenetic community structure and character evolution (with phylomatic and ecovolve) User S Manual Version 4.1

See Also

phylocom.comstruct,phylocom.comdist

Examples

### Assume the file sample1 and phylo1 have been saved to the R working directory.
### The phylocom executable file has been copied to the same working directory
### Or could be invoked in console by command lines.
### inorder to run phylocom in R, simply copy the following command:
#   i = 1
#   PD.res <- phylocom.pd(sample = paste("sample",i, sep = ""), 
#          phylo = paste("phylo",i, sep = ""), 
#          )
#   PD.res
#