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divo (version 1.0.1)

Tools for Analysis of Diversity and Similarity in Biological Systems

Description

A set of tools for empirical analysis of diversity (a number and frequency of different types in population) and similarity (a number and frequency of shared types in two populations) in biological or ecological systems.

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Version

Install

install.packages('divo')

Monthly Downloads

587

Version

1.0.1

License

GPL (>= 3)

Maintainer

Maciej Pietrzak

Last Published

December 16th, 2019

Functions in divo (1.0.1)

ens

ens Effective Number of Species
mh

mh Morisita-Horn Index
srd

srd Symmetrized Renyi's Divergence
rd

rd Renyi's Divergence
x

Example dataset for divo package
i.in

i.in Information Index (I index) for 2-Way Table
pg

pg Power-Geometric Index
pg.ht

pg.ht Power-Geometric Index with the Horvitz-Thompson Correction
ens.ht

ens.ht Effective Number of Species with the Horvitz-Thompson Correction
TCR.Data

TCR.Data Repertoires of Naive and Regulatory T-cell Populations
ji

ji Jaccard Index
i.inp

i.inp Information Index (I index) for 2-Way, 2 Column Table
dp.ht

dp.ht Diversity Profile with the Horvitz-Thompson Adjustment
cvg

cvg Coverage
divo

Tools for Analysis of Diversity and Similarity in Biological Systems
dp

dp Diversity Profile
li

li Sorensen Index