grofit (version 1.1.1-1)

plot.gcFit: Generic plot function for gcFit objects

Description

Generic plot function for gcFit objects.

Usage

"plot"(x, opt = "m", raw = TRUE, slope = FALSE, pch = 1, colModel = 1, colSpline = 2, colData = 1, cex = 1, ...)

Arguments

x

Object of class gcFit.

opt

Character, indicating wether all available model fits ("s") or spline fits ("s") should be plotted.

raw

Logical, indicating wether the raw data should be plotted or not.

slope

Logical, indicating wether the tangent of maximal slope should be plotted or not.

pch

Numeric vector, describing plotting character used for plotting the raw data. Similar to the pch option from plot.default. The vector is recycled if the number of given data points differs from the length of the pch.

colModel

Vector, describing the color used for plotting the spline fit. Similar to the col option from plot.default. The values must be (numeric) from 0:8 or (character) an element of colors().

colSpline

Vector, describing the color used for plotting the spline fit. Similar to the col option from plot.default. The values must be (numeric) from 0:8 or (character) an element of colors().

colData

Vector, describing the color used for plotting the raw data. Similar to the col option from plot.default. The values must be (numeric) from 0:8 or (character) an element of colors(). The vector is recycled if the number of data points differ from the length of the colData.

cex

Numeric vector, describing the character expansion used for plotting the raw data. Similar to the cex option from plot.default. The vector is recycled if the number of data points differ from the length of the cex.

...

Other graphical parameters may also passed as arguments. This has currently no effect and is only meant to fulfill the requirements of a generic function.

See Also

gcFit, plot.gcFitSpline, plot.gcFitModel

Examples

data(grofit.time)
data(grofit.data)
TestRun <- gcFit(grofit.time, grofit.data)
dev.new(width=10,height=5)
par(mfrow=c(1,2))
plot(TestRun, opt="s", pch=1:7, cex=1, colSpline=2, colData=1:7)
title("Spline fit")
plot(TestRun, opt="m", pch=1:7, cex=1, colModel=1, colData=1:7)
title("Model fit")
par(mfrow=c(1,1))