nlme (version 3.1-99)

plot.ranef.lme: Plot a ranef.lme Object

Description

If form is missing, or is given as a one-sided formula, a Trellis dot-plot of the random effects is generated, with a different panel for each random effect (coefficient). Rows in the dot-plot are determined by the form argument (if not missing) or by the row names of the random effects (coefficients). If a single factor is specified in form, its levels determine the dot-plot rows (with possibly multiple dots per row); otherwise, if form specifies a crossing of factors, the dot-plot rows are determined by all combinations of the levels of the individual factors in the formula. The Trellis function dotplot is used in this method function.

If form is a two-sided formula, a Trellis display is generated, with a different panel for each variable listed in the right hand side of form. Scatter plots are generated for numeric variables and boxplots are generated for categorical (factor or ordered) variables.

Usage

## S3 method for class 'ranef.lme':
plot(x, form, omitFixed, level, grid, control, \dots)

Arguments

x

an object inheriting from class ranef.lme, representing the estimated coefficients or estimated random effects for the lme object from which it was produced.

form

an optional formula specifying the desired type of plot. If given as a one-sided formula, a dotplot of the estimated random effects (coefficients) grouped according to all combinations of the levels of the factors named in

omitFixed

an optional logical value indicating whether columns with values that are constant across groups should be omitted. Default is TRUE.

level

an optional integer value giving the level of grouping to be used for x. Only used when x is a list with different components for each grouping level. Defaults to the highest or innermost level of grouping.

grid

an optional logical value indicating whether a grid should be added to plot. Only applies to plots associated with two-sided formulas in form. Default is FALSE.

control

an optional list with control values for the plot, when form is given as a two-sided formula. The control values are referenced by name in the control list and only the ones to be modified from the default need to

...

optional arguments passed to the Trellis dotplot function.

Value

• a Trellis plot of the estimated random-effects (coefficients) versus covariates, or groups.

See Also

ranef.lme, lme, dotplot

Examples

fm1 <- lme(distance ~ age, Orthodont, random = ~ age | Subject)
plot(ranef(fm1))
fm1RE <- ranef(fm1, aug = TRUE)
plot(fm1RE, form = ~ Sex)
plot(fm1RE, form = age ~ Sex)