mixOmics (version 6.3.0)

plot.rcc: Canonical Correlations Plot

Description

This function provides scree plot of the canonical correlations.

Usage

# S3 method for rcc
plot(x, scree.type = c("pointplot", "barplot"), …)

Arguments

x

object of class inheriting from "rcc".

scree.type

character string, (partially) matching one of "pointplot" or "barplot", determining the kind of scree plots to be produced.

…

arguments to be passed to other methods. For the "pointplot" type see points, for "barplot" type see barplot.

See Also

points, barplot, par.

Examples

# NOT RUN {
data(nutrimouse)
X <- nutrimouse$lipid
Y <- nutrimouse$gene
nutri.res <- rcc(X, Y, lambda1 = 0.064, lambda2 = 0.008)

## 'pointplot' type scree 
plot(nutri.res) #(default)

plot(nutri.res, pch = 19, cex = 1.2, 
     col = c(rep("red", 3), rep("darkblue", 18)))

## 'barplot' type scree
plot(nutri.res, scree.type = "barplot")

plot(nutri.res, scree.type = "barplot", density = 20, col = "black")
# }