affy (version 1.50.0)

plotIntens: plotIntens

Description

Plot the PM intensity and the calculated background of one probe set.

Usage

plotIntens(object,y,z,...)

Arguments

object

An object of type ILM

y

A probe set

z

The name of a sample

...

Graphical parameters can be given as arguments to par

Details

plotIntens plots one graph for each CEL-file. Note that it is only possible to plot one probe set at a time (if y (or z) is a vector, only the first value is used). If y=NULL or z=NULL, there is no output.

See Also

ILM,plotILM

Examples

path <- system.file("rawData", "FusionSDK_HG-Focus", "HG-Focus", "2.Calvin",
    package="AffymetrixDataTestFiles")
file1 <- file.path(path,"HG-Focus-1-121502.CEL")
file2 <- file.path(path,"HG-Focus-2-121502.CEL")
result2 <- ilm(c(file1,file2))
## plot output
plotIntens(result2,y="203561_at",z="HG-Focus-2-121502.CEL")