plotMZ

A 'MetaboSet' S4 object containing the experiment after the masses have been quantified by quantSM() function.

Experiment

the Id identificator for the compound to be shown.

AlignId

Integer. the -th selective mass, the 1 (st) selective mass, the 2 (nd) selective mass, etc..

mz.ind

logical. if TRUE the profiles are shown one color per class, if FALSE one color per sample.

per.class

logical. if TRUE the profiles (masses) are shown aligned for a better visual comparison, if FALSE they are shown as they are.

aligned

x axsis (retention time) limits (see <code><a rd-options="" href="/link/plot.default?package=baitmet&version=1.0.1" data-mini-rdoc="baitmet::plot.default">plot.default</a></code>).

xlim

Plots the chromatophic profiles of the masses (selective) for each compound.

Automated quantification of metabolites by targeting mass spectral/retention time libraries into full scan-acquired gas chromatography - mass spectrometry (GC-MS) chromatograms. Baitmet outputs a table with compounds name, spectral matching score, retention index error, and compounds area in each sample. Baitmet can automatically determine the compounds retention indexes with or without co-injection of internal standards with samples.

Xavier Domingo-Almenara

baitmet

Library Driven Compound Profiling in Gas Chromatography - Mass
Spectrometry Data

plotMZ function

x axsis (retention time) limits (see <code><a rd-options='' href='plot.default'>plot.default</a></code>).

plotMZ: Plotting compounds selected masses

Description

Usage

Arguments

See Also