plotTrace

An object of class <code>reg</code> or <code>freq</code>.

haplo.object

Logical. The default value TRUE implies to plot the trace for all the parameters. If FALSE, the vector of names of the desired parameters to plot must be specified in <code>name.var</code>.

If all=FALSE, specify here a vector containing the names of the chosen parameters to plot their trace.

name.var

Logical. Indicates if the trace for rare category must be shown.

keep.rares.trace


  Displays the trace histories for the specified
     parameter(s).


The package BayHap performs simultaneous estimation of
uncertain haplotype frequencies and association with haplotypes
based on generalized linear models for quantitative, binary and
survival traits. Bayesian statistics and Markov Chain Monte
Carlo techniques are the theoretical framework for the methods
of estimation included in this package. Prior values for model
parameters can be included by the user. Convergence diagnostics
and statistical and graphical analysis of the sampling output
can be also carried out.

plotTrace: Plot Trace Histories

Description

Usage

Arguments

Value