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primerTree (version 1.0.6)

plot_tree: plots a tree, optionally with colored and labeled points by taxonomic rank

Description

plots a tree, optionally with colored and labeled points by taxonomic rank

Usage

plot_tree(
  tree,
  type = "unrooted",
  main = NULL,
  guide_size = NULL,
  rank = NULL,
  taxonomy = NULL,
  size = 2,
  legend_cutoff = 25,
  ...
)

Arguments

tree

to be plotted, use layout_tree to layout tree.

type

The type of tree to plot, default unrooted.

main

An optional title for the plot

guide_size

The size of the length guide. If NULL auto detects a reasonable size.

rank

The rank to include, if null only the tree is plotted

taxonomy

A data.frame with an accession field corresponding to the tree tip labels.

size

The size of the colored points

legend_cutoff

The number of different taxa names after which the names are no longer printed.

...

additional arguments passed to layout_tree_ape

Value

plot to be printed.