seacarb (version 2.4.8)

ppH: ppH

Description

Calculates the carbonate chemistry after pH manipulations through addition of acid or base

Usage

ppH(flag, sys, var1, var2, pCO2a, vol, N, S=35, T=20, P=0, Pt=0, 
	Sit=0, pHscale="T", k1k2="x", kf="x", ks="d")

Arguments

flag

Select the couple of variables available. The flags which can be used are: flag = 1 pH and CO2 given flag = 2 CO2 and HCO3 given flag = 3 CO2 and CO3 given flag = 4 CO2 and ALK given flag = 5 CO2 and DIC given f

sys

0 if the manipulation is carried out in a system closed to the atmosphere or 1 if its is carried out in a system open to the atmosphere

var1

Value of the first variable in mol/kg, except for pH and for pCO2 in $\mu$atm

var2

Value of the second variable in mol/kg, except for pH

pCO2a

CO2 partial pressure in the atmosphere pCO2 in $\mu$atm. It is only used in systems open to the atmosphere (i.e. when sys=1)

vol

Volume of acid or base added in liter. By convention, it is given a negative sign for acid additions and a positive sign for base additions. The acid must be fortified with NaCl in order to have the same salinity than seawater.

N

Normality of the acid or base in mol/kg

S

Salinity

T

Temperature in degrees Celsius

P

Hydrostatic pressure in bar (surface = 0)

Pt

Concentration of total phosphate in mol/kg

Sit

Concentration of total silicate in mol/kg

k1k2

"l" for using K1 and K2 from Lueker et al. (2000), "m06" from Millero et al. (2006), "m10" from Millero (2010) and "r" from Roy et al. (1993). "x" is the default flag; the default value is then "l", except if T is outside the range 2 to 35oC and/or S is o

kf

"pf" for using Kf from Perez and Fraga (1987) and "dg" for using Kf from Dickson and Riley (1979 in Dickson and Goyet, 1994). "x" is the default flag; the default value is then "pf", except if T is outside the range 9 to 33oC and/or S is outside the range

ks

"d" for using Ks from Dickon (1990), "k" for using Ks from Khoo et al. (1977), default is "d"

pHscale

choice of pH scale: "T" for using the total scale, "F" for using the free scale and "SWS" for using the seawater scale, default is total scale

Value

• The function returns a data frame containing the following columns:
• comment
  The initial or final state water
• S
  Salinity
• T
  Temperature in degrees Celsius
• P
  Pressure in bar
• pH
  pH
• CO2
  CO2 concentration (mol/kg)
• pCO2
  pCO2, CO2 partial pressure ($\mu$atm)
• fCO2
  fCO2, CO2 fugacity ($\mu$atm)
• HCO3
  HCO3 concentration (mol/kg)
• CO3
  CO3 concentration (mol/kg)
• DIC
  DIC concentration (mol/kg)
• ALK
  ALK, total alkalinity (mol/kg)
• OmegaAragonite
  Omega aragonite, aragonite saturation state
• OmegaCalcite
  Omega calcite, calcite saturation state

encoding

latin1

Details

The Lueker et al. (2000) constants for K1 and K2, the Perez and Fraga (1987) constant for Kf and the Dickson (1990) constant for Ks are recommended by Dickson et al. (2007). It is, however, critical to consider that each formulation is only valid for specific ranges of temperature and salinity: For K1 and K2:

• Roy et al. (1993): S ranging between 0 and 45 and T ranging between 0 and 45oC.
• Lueker et al. (2000): S ranging between 19 and 43 and T ranging between 2 and 35oC.
• Millero et al. (2006): S ranging between 0.1 and 50 and T ranging between 1 and 50oC.
• Millero (2010): S ranging between 1 and 50 and T ranging between 0 and 50oC. Millero (2010) provides a K1 and K2 formulation for the seawater, total and free pH scales. Therefore, when this method is used and if P=0, K1 and K2 are computed with the formulation corresponding to the pH scale given in the flag "pHscale".

For Kh:

• Perez and Fraga (1987): S ranging between 10 and 40 and T ranging between 9 and 33oC.
• Dickson and Riley (1979 in Dickson and Goyet, 1994): S ranging between 0 and 45 and T ranging between 0 and 45oC.

For Ks:

• Dickson (1990): S ranging between 5 and 45 and T ranging between 0 and 45oC.
• Khoo et al. (1977): S ranging between 20 and 45 and T ranging between 5 and 40oC.

The arguments can be given as a unique number or as vectors. If the lengths of the vectors are different, the longer vector is retained and only the first value of the other vectors is used. It is recommended to use either vectors with the same dimension or one vector for one argument and numbers for the other arguments. Pressure corrections and pH scale:

• For K1, K2, pK1, pK2, pK3, Kw, Kb, Khs and Ksi, the pressure correction was applied on the seawater scale. Hence, if needed, values were first transformed from the total scale to the seawater scale, the pressure correction applied as described by Millero (1995), and the value was transformed back to the required scale (T, F or SWS).
• For Kf, the pressure correction was applied on the free scale. The formulation of Dickson and Riley (1979 in Dickson and Goyet, 1994) provides Kf on the free scale but that of Perez and Fraga (1987) provides it on the total scale. Hence, in that case, Kf was first transformed from the total scale to the free scale. With both formulations, the pressure correction was applied as described by Millero (1995), and the value was transformed back to the required scale (T, F or SWS).
• For Ks, the pressure correction was applied on the free scale. The pressure correction was applied as described by Millero (1995), and the value was transformed back to the required scale (T, F or SWS).
• For Kn, The pressure correction was applied on the seawater scale. The pressure correction was applied as described by Millero (1995), and the value was transformed back to the required scale (T, F or SWS).

References

Dickson A. G., 1990 Standard potential of the reaction: AgCI(s) + 1/2H2(g) = Ag(s) + HCI(aq), and the standard acidity constant of the ion HSO4 in synthetic sea water from 273.15 to 318.15 K. Journal of Chemical Thermodynamics 22, 113-127. Dickson A. G., Sabine C. L. and Christian J. R., 2007 Guide to best practices for ocean CO2 measurements. PICES Special Publication 3, 1-191. Khoo H. K., Ramette R. W., Culberson C. H. and Bates R. G., 1977 Determination of Hydrogen Ion Concentration in Seawater from 5 to 40oC: Standard Potentials at Salinities from 20 to 45. Analytical Chemistry 49, 29-34. Gattuso J.-P. and Lavigne H., 2009 Perturbation experiments to investigate the impact of ocean acidification: approaches and software tools. Biogeosciences 6, 4413-4439. Millero F. J., 2010 Carbonate constant for estuarine waters. Marine and Freshwater Research 61: 139-142. Millero F. J., Graham T. B., Huang F., Bustos-Serrano H. and Pierrot D., 2006 Dissociation constants of carbonic acid in seawater as a function of salinity and temperature. Marine Chemistry 100, 80-84.

See Also

buffer.

Examples

ppH(flag=24, sys=0, var1=384, var2=2302e-6, pCO2a=384, vol=-12e-3, 
	N=0.01, S=34.3, T=16, P=0, pHscale="T", kf="pf", k1k2="l", ks="d")

ppH(flag=24, sys=1, var1=384, var2=2302e-6, pCO2a=384, vol=-12e-3, 
	N=0.01, S=34.3, T=16, P=0, pHscale="T", kf="pf", k1k2="l", ks="d")