primpke

Example spectral library to be used in microplastic evaluations. An example on how to format a <code><a rd-options="=SpectralReference-class" href="/link/SpectralReference?package=uFTIR&version=0.1.4&to=%3DSpectralReference-class" data-mini-rdoc="=SpectralReference-class::SpectralReference">SpectralReference</a></code> object.
It was taken form:
Primpke, S., Wirth, M., Lorenz, C., Gerdts, G. 2018. Reference database design for the automated analysis of microplastic samples based on Fourier transform infrared (FTIR) spectroscopy. Analytical and Bioanalytical Chemistry 410: 5131-5141. You might access to the article at doi: 10.1007/s00216-018-1156-x

datasets

A set of tools to read, process, and summarize Agilent Cary 620 uFTIR Microscope hyperspectral images
primarily intended for microplastic analysis.

Fabio Corradini

uFTIR

Process and Analyze Agilent Cary 620 FTIR Microscope Images

primpke function

an S4 <code><a rd-options="=SpectralReference-class" href="/link/SpectralReference?package=uFTIR&version=0.1.4&to=%3DSpectralReference-class" data-mini-rdoc="=SpectralReference-class::SpectralReference">SpectralReference</a></code> object with:<dl class="dl-horizontal">
 <dt>substances</dt><dd>character vector with the 270 names of the polymers included in Spectra</dd>
 <dt>clusterlist</dt><dd>integer vector with the corresponding cluster of each polymer described</dd>
 <dt>clusternames</dt><dd>the name of the cluster, sorted in ascending order according to clusterlist</dd>
 <dt>Spectra</dt><dd>matrix with the absorbance readings of each polymer (270 x 1176)</dd>
 <dt>wavenumbers</dt><dd>read wavenumbers. Correspond to Spectra ncol</dd>
</dl>

Format

Example spectral library to be used in microplastic evaluations. An example on how to format a <code><a rd-options='=SpectralReference-class' href='SpectralReference'>SpectralReference</a></code> object.
It was taken form:
Primpke, S., Wirth, M., Lorenz, C., Gerdts, G. 2018. Reference database design for the automated analysis of microplastic samples based on Fourier transform infrared (FTIR) spectroscopy. Analytical and Bioanalytical Chemistry 410: 5131-5141. You might access to the article at doi: 10.1007/s00216-018-1156-x

Example library — primpke

an S4 <code><a rd-options='=SpectralReference-class' href='SpectralReference'>SpectralReference</a></code> object with:<dl class='dl-horizontal'>
 <dt>substances</dt><dd>character vector with the 270 names of the polymers included in Spectra</dd>
 <dt>clusterlist</dt><dd>integer vector with the corresponding cluster of each polymer described</dd>
 <dt>clusternames</dt><dd>the name of the cluster, sorted in ascending order according to clusterlist</dd>
 <dt>Spectra</dt><dd>matrix with the absorbance readings of each polymer (270 x 1176)</dd>
 <dt>wavenumbers</dt><dd>read wavenumbers. Correspond to Spectra ncol</dd>
</dl>

primpke: Example library

Description

Usage

Arguments

Format