qvalue.cal

a numeric vector containing the p-values.

a numeric value specifying the prior probability
     that a gene is not differentially expressed.

If <code>version=2</code>, the original version of
     the q-value, i.e. min{pFDR}, will be computed. if
     <code>version=1</code>, min{FDR} will be used in the computation
     of the q-value.

version


  Computes the q-values of a given set of p-values.


htest

Identification of differentially expressed genes and
estimation of the False Discovery Rate (FDR) using both the
Significance Analysis of Microarrays (SAM) and the Empirical
Bayes Analyses of Microarrays (EBAM).

Holger Schwender

siggenes

Multiple testing using SAM and Efron's empirical Bayes
approaches

qvalue.cal function

a numeric value specifying the prior probability
     that a gene is not differentially expressed.

If <code>version=2</code>, the original version of
     the q-value, i.e. min{pFDR}, will be computed. if
     <code>version=1</code>, min{FDR} will be used in the computation
     of the q-value.

Computes the q-values of a given set of p-values.

qvalue.cal: Computation of the q-value

Description

Usage

Arguments

Value

Details

References

See Also