INSPEcT (version 1.2.2)

ratesFirstGuess: Retrieve pre-modeling rates and concentrations

Description

Retrieve pre-modeling rates and concentrations

This method allow to access to the estimated synthesis, degradation, processing rates and pre mRNA and total mRNA concentrations the way they were calculated by the constructor function newINSPEcT.

Usage

ratesFirstGuess(object, feature)
"ratesFirstGuess"(object, feature)

Arguments

object

An object of class INSPEcT

feature

A character indicating the feature to retireve, "synthesis", "degradation", "processing" for rates, "total" for total mRNA concentrations or "preMRNA" for premature mRNA concentrations

Value

A numeric matrix containing the values for the selected feature

See Also

newINSPEcT, ratesFirstGuessVar

Examples

data('rpkms', package='INSPEcT')
tpts <- c(0, 1/6, 1/3, 1/2, 1, 2, 4, 8, 16)
tL <- 1/6
mycerIds <- newINSPEcT(tpts, tL, rpkms$foursu_exons, rpkms$total_exons, 
	rpkms$foursu_introns, rpkms$total_introns, BPPARAM=SerialParam())
# get estimated synthesis rates
ratesFirstGuess(mycerIds, 'synthesis')