read.bugs

character vector of filenames (e.g. returned from
 <code><a rd-options="" href="/link/bugs?package=R2OpenBUGS&version=3.2-3.2.1" data-mini-rdoc="R2OpenBUGS::bugs">bugs</a></code> in call such as <code>bugs(....., codaPkg=TRUE,
 .....)</code>). Each of the files contains coda output for one chain
 produced by OpenBUGS, the directory name of the corresponding
 file <code class="file">CODAindex.txt</code> is extracted from the first element of
 <code>codafiles</code>.

codafiles

further arguments to be passed to
 <code><a rd-options="coda" href="/link/read.coda?package=R2OpenBUGS&version=3.2-3.2.1&to=coda" data-mini-rdoc="coda::read.coda">read.coda</a></code>

This function reads Markov Chain Monte Carlo output in the
 CODA format produced by OpenBUGS and returns an object of class
 <code><a rd-options="coda" href="/link/mcmc.list?package=R2OpenBUGS&version=3.2-3.2.1&to=coda" data-mini-rdoc="coda::mcmc.list">mcmc.list</a></code> for further output analysis using the
 coda package.

file

Using this package,
it is possible to call a BUGS model, summarize inferences and
convergence in a table and graph, and save the simulations in arrays for easy access
in R.

Neal Thomas

R2OpenBUGS

Running OpenBUGS from R

read.bugs function

character vector of filenames (e.g. returned from
 <code><a rd-options='' href='bugs'>bugs</a></code> in call such as <code>bugs(....., codaPkg=TRUE,
 .....)</code>). Each of the files contains coda output for one chain
 produced by OpenBUGS, the directory name of the corresponding
 file <code class="file">CODAindex.txt</code> is extracted from the first element of
 <code>codafiles</code>.

further arguments to be passed to
 <code><a rd-options='coda' href='read.coda'>read.coda</a></code>

This function reads Markov Chain Monte Carlo output in the
 CODA format produced by OpenBUGS and returns an object of class
 <code><a rd-options='coda' href='mcmc.list'>mcmc.list</a></code> for further output analysis using the
 coda package.

read.bugs: Read output files in CODA format

Description

Usage

Arguments

See Also