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adegenet (version 2.0.1)

read.fstat: Reading data from Fstat

Description

The function read.fstat reads Fstat data files (.dat) and convert them into a genind object.

Usage

read.fstat(file, quiet = FALSE)

Arguments

file
a character string giving the path to the file to convert, with the appropriate extension.
quiet
logical stating whether a conversion message must be printed (TRUE,default) or not (FALSE).

Value

an object of the class genind

Details

Note: read.fstat is meant for DIPLOID DATA ONLY. Haploid data with the Hierfstat format can be read into R using read.table or read.csv after removing headers and 'POP' lines, and then converted using df2genind.

References

Fstat (version 2.9.3). Software by Jerome Goudet. http://www2.unil.ch/popgen/softwares/fstat.htm

See Also

import2genind, df2genind, read.genetix, read.structure, read.genepop

Examples

Run this code

obj <- read.fstat(system.file("files/nancycats.dat",package="adegenet"))
obj

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