genomes (version 2.16.0)

read.genemark: Read a GeneMark output file

Description

Read a GeneMark HMM version 2.6 file from NCBI (version 3)

Usage

read.genemark(file)

Arguments

file

GeneMark HMM file

Value

Details

GeneMark HMM files are available from the NCBI genomes ftp directory, ftp://ftp.ncbi.nih.gov/genomes.

References

see http://exon.gatech.edu for details about GeneMark

See Also

read.ncbi.ftp

Examples

file <- "ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Yersinia_pestis_CO92_uid57621/NC_003132.GeneMarkHMM-2.6r"
 x <-read.genemark(file)
 x
 metadata(x)