.info.gz
and .dose.gz
files, as generated by the MACH and
minimac genotype imputation programs, and returns the data in a
standard format (see snpdata) that can be used by other
functions in this package.
read.snpdata.minimac(fileroot, tol.af = 0.01, phenotypes = NULL, isuffix = ".info.gz", dsuffix = ".dose.gz")
.info.gz
and .dose.gz
)
will be appended.NULL
, a data frame of phenotypes to be merged with the
genotypes; must contain a column called MACHID which is used to
match against the first column of the mldose file.read.snpdata.mach
with different default isuffix and dsuffix arguments.