readGeneTermSets

fileName


character. Tool used for the FEA (row name from <code>data(FEA_tools); FEA_tools</code>)


tool


logical. Only for GAGE: Wether to simplify the results and keep only the essential terms in the clustes.


simplifyGage


Reads a file containing gene-term sets (formatted output from FEA) and transform it into clusters/metagroups and geneTermSets tables to imput to FGNet.


Build and visualize functional gene and term networks from clustering of enrichment analyses in multiple annotation spaces. The package includes a graphical user interface (GUI) and functions to perform the functional enrichment analysis through DAVID, GeneTerm Linker, gage (GSEA) and topGO.

Sara Aibar

FGNet

Functional Gene Networks derived from biological enrichment analyses

readGeneTermSets function

character. Tool used for the FEA (row name from <code>data(FEA_tools); FEA_tools</code>)

logical. Only for GAGE: Wether to simplify the results and keep only the essential terms in the clustes.

Reads a file containing gene-term sets (formatted output from FEA) and transform it into clusters/metagroups and geneTermSets tables to imput to FGNet.

readGeneTermSets: Read gene-term sets

Description

Usage

Arguments

Value

See Also