readLengthHist

readLengthHist,DNAStringSet-method

readLengthHist,ShortRead-method

readLengthHist,SFFContainer-method

An object of class <a rd-options="" href="/link/DNAStringSet?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::DNAStringSet">DNAStringSet</a>, <a rd-options="" href="/link/ShortRead?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::ShortRead">ShortRead</a> or <a rd-options="" href="/link/SFFContainer?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::SFFContainer">SFFContainer</a>.

object

Reads longer than the cutoff-percent quantile are omitted from the plot.

cutoff

xlab

ylab

The number of breaks in the histogram (see &#145;hist&#146;).

breaks

Arguments to be passed to methods, such as graphical parameters (see &#145;par&#146;).


  This function plots a histogram of the read lengths.


methods

The R453Plus1 Toolbox comprises useful functions for the
analysis of data generated by Roche's 454 sequencing platform.
It adds functions for quality assurance as well as for
annotation and visualization of detected variants,
complementing the software tools shipped by Roche with their
product. Further, a pipeline for the detection of structural
variants is provided.

HansUlrich Klein

R453Plus1Toolbox

A package for importing and analyzing data from Roche's Genome
Sequencer System

readLengthHist function

An object of class <a href="DNAStringSet" rd-options="">DNAStringSet</a>, <a href="ShortRead" rd-options="">ShortRead</a> or <a href="SFFContainer" rd-options="">SFFContainer</a>.

The number of breaks in the histogram (see <sQuote>hist</sQuote>).

Arguments to be passed to methods, such as graphical parameters (see <sQuote>par</sQuote>).

This function plots a histogram of the read lengths.

readLengthHist: Histogram Of The Read Lengths

Description

Usage

Arguments