seqCBS (version 1.2.1)

readListInputFile: Read meta file containing list of raw data files

Description

Reads a meta file that contains the file names and type of the data files. See details for the format.

Usage

readListInputFile(inputFilename, sep = "\t")

Arguments

inputFilename

The name of file, containing relevant information of all input files

sep

Delimiter of the meta input file, default is tab-delimited

Value

normalFiles

A character vector containing the names of files with the normal reads

tumorFiles

A character vector containing the names of files with the tumor reads

Details

The meta input file should be organized in a table format with 2 columns, one of which is 'file' and the other is 'type', indicating the data file names and whether the data is from 'normal' or 'tumor'.

See Also

readInput, readSeq

Examples

# NOT RUN {
# This shows the format of the meta file
data(JSSim_Meta)
print(JSSim_Meta)
# }