rstan-plotting-functions

List of RStan plotting functions that return ggplot objects

User-facing R functions are provided to parse, compile, test,
estimate, and analyze Stan models by accessing the header-only Stan library
provided by the 'StanHeaders' package. The Stan project develops a
probabilistic programming language that implements full Bayesian statistical
inference via Markov Chain Monte Carlo, rough Bayesian inference via 'variational'
approximation, and (optionally penalized) maximum likelihood estimation via
optimization. In all three cases, automatic differentiation is used to quickly
and accurately evaluate gradients without burdening the user with the need
to derive the partial derivatives.

Ben Goodrich

rstan

R Interface to Stan

Jiqiang Guo

Jonah Gabry

Daniel Lee

Krzysztof Sakrejda

Trustees of Columbia University

Oleg Sklyar

The R Core Team

Jens Oehlschlaegel-Akiyoshi

Hadley Wickham

Joel de Guzman

John Fletcher

Thomas Heller

Eric Niebler

rstan-plotting-functions function

<dl class="dl-horizontal">
  <dt>Posterior intervals and point estimates</dt><dd><code><a rd-options="" href="/link/stan_plot?package=rstan&version=2.15.1" data-mini-rdoc="rstan::stan_plot">stan_plot</a></code></dd>
  <dt>Traceplots</dt><dd><code><a rd-options="" href="/link/stan_trace?package=rstan&version=2.15.1" data-mini-rdoc="rstan::stan_trace">stan_trace</a></code></dd>
  <dt>Histograms</dt><dd><code><a rd-options="" href="/link/stan_hist?package=rstan&version=2.15.1" data-mini-rdoc="rstan::stan_hist">stan_hist</a></code></dd>
  <dt>Kernel density estimates</dt><dd><code><a rd-options="" href="/link/stan_dens?package=rstan&version=2.15.1" data-mini-rdoc="rstan::stan_dens">stan_dens</a></code></dd>
  <dt>Scatterplots</dt><dd><code><a rd-options="" href="/link/stan_scat?package=rstan&version=2.15.1" data-mini-rdoc="rstan::stan_scat">stan_scat</a></code></dd>
  <dt>Diagnostics for Hamiltonian Monte Carlo and the No-U-Turn Sampler</dt><dd><code><a rd-options="" href="/link/stan_diag?package=rstan&version=2.15.1" data-mini-rdoc="rstan::stan_diag">stan_diag</a></code></dd>
  <dt>Rhat</dt><dd><code><a rd-options="" href="/link/stan_rhat?package=rstan&version=2.15.1" data-mini-rdoc="rstan::stan_rhat">stan_rhat</a></code></dd>
  <dt>Ratio of effective sample size to total posterior sample size</dt><dd><code><a rd-options="" href="/link/stan_ess?package=rstan&version=2.15.1" data-mini-rdoc="rstan::stan_ess">stan_ess</a></code></dd>
  <dt>Ratio of Monte Carlo standard error to posterior standard deviation</dt><dd><code><a rd-options="" href="/link/stan_mcse?package=rstan&version=2.15.1" data-mini-rdoc="rstan::stan_mcse">stan_mcse</a></code></dd>
  <dt>Autocorrelation</dt><dd><code><a rd-options="rstan" href="/link/stan_ac?package=rstan&version=2.15.1&to=rstan" data-mini-rdoc="rstan::stan_ac">stan_ac</a></code></dd>
</dl>

RStan plotting functions

RStan Plotting Functions — rstan-plotting-functions

<dl class='dl-horizontal'>
  <dt>Posterior intervals and point estimates</dt><dd><code><a rd-options='' href='stan_plot'>stan_plot</a></code></dd>
  <dt>Traceplots</dt><dd><code><a rd-options='' href='stan_trace'>stan_trace</a></code></dd>
  <dt>Histograms</dt><dd><code><a rd-options='' href='stan_hist'>stan_hist</a></code></dd>
  <dt>Kernel density estimates</dt><dd><code><a rd-options='' href='stan_dens'>stan_dens</a></code></dd>
  <dt>Scatterplots</dt><dd><code><a rd-options='' href='stan_scat'>stan_scat</a></code></dd>
  <dt>Diagnostics for Hamiltonian Monte Carlo and the No-U-Turn Sampler</dt><dd><code><a rd-options='' href='stan_diag'>stan_diag</a></code></dd>
  <dt>Rhat</dt><dd><code><a rd-options='' href='stan_rhat'>stan_rhat</a></code></dd>
  <dt>Ratio of effective sample size to total posterior sample size</dt><dd><code><a rd-options='' href='stan_ess'>stan_ess</a></code></dd>
  <dt>Ratio of Monte Carlo standard error to posterior standard deviation</dt><dd><code><a rd-options='' href='stan_mcse'>stan_mcse</a></code></dd>
  <dt>Autocorrelation</dt><dd><code><a rd-options='rstan' href='stan_ac'>stan_ac</a></code></dd>
</dl>

RStan Plotting Functions

rstan-plotting-functions: RStan Plotting Functions

Description

Arguments

RStan plotting functions

See Also