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phyloseq (version 1.16.2)

sample_variables: Get the sample variables present in sample_data

Description

This is a simple accessor function to make it more convenient to determine the sample variable names of a particular phyloseq-class object.

Usage

sample_variables(physeq, errorIfNULL=TRUE)

Arguments

physeq
errorIfNULL
(Optional). Logical. Should the accessor stop with an error if the slot is empty (NULL)? Default TRUE.

Value

  • Character vector. The names of the variables in the sample_data data.frame. Essentially the column names. Useful for selecting model and graphics parameters that interact with sample_data.

See Also

get_taxa taxa_names sample_names

Examples

Run this code
data(enterotype)
sample_variables(enterotype)

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