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robCompositions (version 1.6.3)

Robust Estimation for Compositional Data.

Description

The package includes methods for imputation of compositional data including robust methods, methods to impute rounded zeros, (robust) outlier detection for compositional data, (robust) principal component analysis for compositional data, (robust) factor analysis for compositional data, (robust) discriminant analysis for compositional data (Fisher rule), robust regression with compositional predictors and (robust) Anderson-Darling normality tests for compositional data as well as popular log-ratio transformations (alr, clr, ilr, and their inverse transformations). In addition, visualisation and diagnostic tools are implemented as well as high and low-level plot functions for the ternary diagram.

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Version

Install

install.packages('robCompositions')

Monthly Downloads

1,357

Version

1.6.3

License

GPL-2

Maintainer

Matthias Templ

Last Published

February 27th, 2013

Functions in robCompositions (1.6.3)

print.outCoDa

print method for outCoDa objects
adtest

Anderson-Darling Normality Tests
ternaryDiagPoints

Add points or lines to a given ternary diagram.
outCoDa

Outlier detection for compositional data
invclr

Inverse centred log-ratio transformation
plot.pcaCoDa

Plot method
addLRinv

Additive logistic transformaton
ilr

Isometric log-ratio transformation
machineOperators

Machine operators data set
coffee

Coffee data
print.imp

Print method for objects of class imp
robCompositions-package

Robust Estimation for Compositional Data.
ternaryDiagAbline

Adds a line to a ternary diagram.
alr

Additive log-ratio transformation
expenditures

Household expenditures data
pfa

Factor analysis for compositional data
missPatterns

missing or zero pattern structure.
isomLRinv

Inverse isometric log-ratio transformation
impAll

Replacement of rounded zeros and missing values.
impCoda

Imputation of missing values in compositional data
invalr

Additive logistic transformaton
skyeLavas

Aphyric skye lavas data
ternaryDiag

Ternary diagram
phd

PhD Students in the EU
lmCoDaX

Classical and robust regression of non-compositional response on compositional predictors
print.adtestWrapper

print method for objects of class adtestWrapper
clr

Centred log-ratio transformation
print.daFisher

print method for objects of class daFisher
orthbasis

Orthonormal basis
haplogroups

Haplogroups data.
aDist

Aitchison distance
invilr

Inverse isometric log-ratio transformation
print.pcaCoDa

Print method for pcaCoDa objects
summary.adtestWrapper

summary method for objects of class adtestWrapper
cenLR

Centred log-ratio transformation
expendituresEU

Mean consumption expenditures data.
impRZalr

alr EM-based Imputation for Rounded Zeros
arcticLake

Artic lake sediment data
impKNNa

Imputation of missing values in compositional data using knn methods
summary.imp

Summary method for objects of class imp
ternaryDiagEllipse

Adds tolerance ellipses to a ternary diagram.
robVariation

Robust variation matrix
adjust

Adjusting for original scale
gm

geometric mean
impRZilr

EM-based replacement of rounded zeros in compositional data
constSum

Constant sum
isomLR

Isometric log-ratio transformation
adtestWrapper

Wrapper for Anderson-Darling tests
cenLRinv

Inverse centred log-ratio transformation
addLR

Additive log-ratio transformation
pcaCoDa

Robust principal component analysis for compositional data
plot.outCoDa

plot method for outCoDa objects
daFisher

Discriminant analysis by Fisher Rule.
plot.imp

Plot method for objects of class imp