INSPEcT (version 1.2.2)

sfPlot: A nice plot to see scaling factors used for RNA-seq and 4sU-seq libraries

Description

A nice plot to see scaling factors used for RNA-seq and 4sU-seq libraries

This method generates a plot that immediately shows the scaling factors used to scale RNA- and 4sU-seq libraries and the possible relations between them. The ratio between the RNA- and the 4sU-seq scaling can be in fact considered as a yield of the synthesis within the cells.

Usage

sfPlot(object)
"sfPlot"(object)

Arguments

object

An object of class INSPEcT

Value

None

Examples

data('rpkms', package='INSPEcT')
tpts <- c(0, 1/6, 1/3, 1/2, 1, 2, 4, 8, 16)
tL <- 1/6
mycerIds <- newINSPEcT(tpts, tL, rpkms$foursu_exons, rpkms$total_exons, 
	rpkms$foursu_introns, rpkms$total_introns, BPPARAM=SerialParam())
sfPlot(mycerIds)