Computes a p-value for the exact test of Hardy--Weinberg proportions,
for genotype counts for a biallelic locus, as described by Wiggington
et al. (2005)
Usage
snphwe(g)
Arguments
g
Vector of genotypes.
Value
The p-value.
Details
This function is a wrapper for snphweCounts, which uses
code by Wiggington et al. to compute a P-value for an exact test of
Hardy--Weinberg proportions.
This function requires that when g is sorted, the order is
hom/het/hom. For example g can be additively coded genotypes
(0, 1, 2), or text coded genotypes like AA, AC, CC. For text coded
genotypes the heterozygote MUST ALWAYS be coded the same way, e.g. a
mixture of AC and CA are not allowed.