ssPermAnalysis: smoothing-splines anova fits for each permutation
Description
Calculates the fit for each permutation and estimates
the area under the null (permutted) model for interesting time
intervals of differential abundance.
Usage
ssPermAnalysis(data, formula, permList, intTimes, timePoints, include = c("class", "time:class"), ...)
Arguments
data
Data used in estimation.
formula
Formula for ssanova.
permList
A list of permutted class memberships
intTimes
Interesting time intervals.
timePoints
Time points to interpolate over.
include
Parameters to include in prediction.
...
Options for ssanova
Value
A matrix of permutted area estimates for time intervals of interest.