extracat (version 1.7-6)

subtree: subtrees

Description

Takes a subtree of a dendrogram object such as generated by hclust according to a prespecified number of clusters or a prespecified height.

Usage

subtree(tree, k = NULL, h = NULL)

Arguments

tree

The tree object which contains the attributes merge and height in the same way as an hclust object.

k

The number of clusters at which to cut.

h

The height at which to cut.

Value

An hclust object.

Details

Does the same as cutree with two differences: Firstly it gives back an entire tree object, i.e. an object with attributes merge, height, labels and order, as well as data, which contains the cluster ids. Secondly the cluster ids are chosen by the heights at which the clusters were built.

See Also

cutree

Examples

# NOT RUN {
hc <- hclust(dist(USArrests), "ave")

hcs <- subtree(hc, k = 7)
hcs2 <- subtree(hc, h= 30)

attributes(hcs)
fluctile(table(hcs$data, cutree(hc, k=7)))

par(mfrow=c(1,3))
plot(hc)
plot(hcs)
plot(hcs2)

# }