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stepwise (version 0.3)

summary.maxchi: Summary of a maxchi object

Description

Print a summary of a maxchi object

Usage

"summary"(object, ...)

Arguments

object
A list object of class maxchi output by the maxchi function
...
Additional arguments to the summary function (currently unused)

Value

siteWinlocs
Window locations with significant recombination signal
siteChisqs
The maximum chi-square at these window locations
pairs
The pair(s) that give the maximum chi-square statistic at each window location

Details

The output of maxchi includes information on all site- and pair-specific chi-squares that exceed the 90th percentile of the permutation distribution. The summary.maxchi function computes maximum site-specific measures (i.e. maxima over all sequence-pair chi-squares from the same site) and reports all sequence pairs that tied for these maximum values.

See Also

maxchi