S4groupGeneric: S4 Group Generic Functions

Description

Methods can be defined for group generic functions. Each group generic function has a number of member generic functions associated with it.

Methods defined for a group generic function cause the same method to be defined for each member of the group, but a method explicitly defined for a member of the group takes precedence over a method defined, with the same signature, for the group generic.

The functions shown in this documentation page all reside in the methods package, but the mechanism is available to any programmer, by calling setGroupGeneric (provided package methods is attached).

Usage

## S4 group generics:
Arith(e1, e2)
Compare(e1, e2)
Ops(e1, e2)
Logic(e1, e2)
Math(x)
Math2(x, digits)
Summary(x, …, na.rm = FALSE)
Complex(z)

Arguments

x, z, e1, e2

objects.

digits

number of digits to be used in round or signif.

…

further arguments passed to or from methods.

na.rm

logical: should missing values be removed?

Details

Methods can be defined for the group generic functions by calls to setMethod in the usual way. Note that the group generic functions should never be called directly -- a suitable error message will result if they are. When metadata for a group generic is loaded, the methods defined become methods for the members of the group, but only if no method has been specified directly for the member function for the same signature. The effect is that group generic definitions are selected before inherited methods but after directly specified methods. For more on method selection, see Methods_Details.

There are also S3 groups Math, Ops, Summary and Complex, see ?S3groupGeneric, with no corresponding R objects, but these are irrelevant for S4 group generic functions.

The members of the group defined by a particular generic can be obtained by calling getGroupMembers. For the group generic functions currently defined in this package the members are as follows:

Arith: "+", "-", "*", "^", "%%", "%/%", "/"
Compare: "==", ">", "<", "!=", "<=", ">="
Logic: "&", "|".
Ops: "Arith", "Compare", "Logic"
Math: "abs", "sign", "sqrt", "ceiling", "floor", "trunc", "cummax", "cummin", "cumprod", "cumsum", "log", "log10", "log2", "log1p", "acos", "acosh", "asin", "asinh", "atan", "atanh", "exp", "expm1", "cos", "cosh", "cospi", "sin", "sinh", "sinpi", "tan", "tanh", "tanpi", "gamma", "lgamma", "digamma", "trigamma"
Math2: "round", "signif"
Summary: "max", "min", "range", "prod", "sum", "any", "all"
Complex: "Arg", "Conj", "Im", "Mod", "Re"

Note that Ops merely consists of three sub groups.

All the functions in these groups (other than the group generics themselves) are basic functions in R. They are not by default S4 generic functions, and many of them are defined as primitives. However, you can still define formal methods for them, both individually and via the group generics. It all works more or less as you might expect, admittedly via a bit of trickery in the background. See Methods_Details for details.

Note that two members of the Math group, log and trunc, have … as an extra formal argument. Since methods for Math will have only one formal argument, you must set a specific method for these functions in order to call them with the extra argument(s).

For further details about group generic functions see section 10.5 of the second reference.

References

Chambers, John M. (2016) Extending R, Chapman & Hall. (Chapters 9 and 10.)

Chambers, John M. (2008) Software for Data Analysis: Programming with R Springer. (Section 10.5)

Examples

Run this code

# NOT RUN {
setClass("testComplex", slots = c(zz = "complex"))
## method for whole group "Complex"
setMethod("Complex", "testComplex",
          function(z) c("groupMethod", callGeneric(z@zz)))
## exception for Arg() :
setMethod("Arg", "testComplex",
          function(z) c("ArgMethod", Arg(z@zz)))
z1 <- 1+2i
z2 <- new("testComplex", zz = z1)
stopifnot(identical(Mod(z2), c("groupMethod", Mod(z1))))
stopifnot(identical(Arg(z2), c("ArgMethod", Arg(z1))))
# }