strataG (version 1.0.3)

variableSites: Variable Sites

Description

Identify variable sites among sequences.

Usage

variableSites(x, bases = c("a", "c", "g", "t", "-"))

Arguments

x

a gtypes object with sequences, a DNAbin object, or a list of sequences.

bases

character vector of bases to consider.

Value

• A list with: ll{ site a a DNAbin object composed of variable sites. site.freqs a matrix of base pair frequencies by site. }

See Also

fixedSites

Examples

data(dolph.haps)

variableSites(dolph.haps)