pathfindR (version 1.3.0)

visualize_hsa_KEGG: Visualize Human KEGG Pathways

Description

Visualize Human KEGG Pathways

Usage

visualize_hsa_KEGG(pw_table, gene_data)

Arguments

pw_table

Data frame of enrichment results. Must-have columns are: "ID" and "Pathway".

gene_data

Single column data frame containing change values (e.g. log(fold change) values) for significant genes. Row names are gene symbols.

Value

Creates visualizations of the pathways with the package pathview and saves them in the folder "pathway_visualizations" under the current working directory.

See Also

pathview for KEGG pathway-based data integration and visualization. See visualize_pws for the wrapper function for creating pathway diagrams. See run_pathfindR for the wrapper function of the pathfindR workflow.

Examples

# NOT RUN {
visualize_hsa_KEGG(pathway_table, gene_data)
# }