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speciesgeocodeR (version 1.0-4)

Prepare Species Distributions for the Use in Phylogenetic Analyses

Description

Preparation of species occurrences and distribution data for the use in phylogenetic analyses. SpeciesgeocodeR is built for data cleaning, data exploration and data analysis and especially suited for biogeographical and ecological questions on large datasets. The package includes the easy creation of summary-tables and -graphs and geographical maps, the automatic cleaning of geographic occurrence data, the calculating of coexistence matrices and species ranges (EOO) as well as mapping diversity in geographic areas.

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Version

Install

install.packages('speciesgeocodeR')

Monthly Downloads

39

Version

1.0-4

License

GPL-3

Maintainer

Last Published

October 17th, 2015

Functions in speciesgeocodeR (1.0-4)

PlotHull

Plotting Species Ranges
RangeRichness

Species Richness Raster from Range Polygons
CoExClass

Species Coexistence Matrices in Given Areas.
lemurs_test

Distribution of Lemur Species with Problematic Records
countryref

Country Centroids and Country Capitals
WwfLoad

Load the WWF Terrestrial Ecoregions
ReadPoints

Loading Data into SpeciesgeocodeR
WriteOut

Write SpeciesgeocodeR results to the Working Directory
mdg_biomes

WWF Biomes of Madagascar
SpeciesGeoCoder

A Complete SpeciesgeocodeR Analysis
summary.spgeoOUT

Summary Method for SpgeoOUT
RichnessGrid

Species Richness and Abundance Grids from Point Records
plot.spgeoOUT

Plot Method for SpgeoOUT Objects
MapGrid

Plotting Rasters in the Geographical Context
CalcRange

Calculate the Extent of Occurrence
lemurs

Distribution of Lemur Species
SpGeoCod

Point to Polygon Classification from Text Files
Spgc2BioGeoBEARS

Geography Input for BioGeoBEARS
speciesgeocodeR-package

Prepare Species Distributions for the Use in Phylogenetic Analyses
GetElevation

Elevation Data for Multiple Species
GeoClean

Automated Cleaning of Geographic Coordinates
summary.spgeoIN

Summary Method for SpgeoIN
mdg_poly

WWF Biomes of Madagascar in Table Format
MapRichness

Plotting Species Richness in a Set of Polygons
SpGeoCodH

A Standard a SpeciesgeocodeR Area Classification
lemurs_in

Example for an spgeoIN Object
plot.spgeoIN

Plot Method for SpgeoIN Objects