ABSSeq (version 1.8.0)

excounts: Accessors for the 'excounts' slot of a ABSDataSet object.

Description

Accessors for the 'excounts' slot of a ABSDataSet object, return a matrix

Usage

"excounts"(object)<-value

Arguments

object

a ABSDataSet object.

value

an numeric matrix

Details

The excounts slot holds the nomarlized (trimmed or not) count data as a matrix of non-negative integer count values, rows and columns for genes and samples, respectively.

See Also

ABSDataSet, ReplaceOutliersByMAD

Examples

obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups))
obj <- normalFactors(obj)
obj <- ReplaceOutliersByMAD(obj)
head(excounts(obj))