ABSSeq (version 1.8.0)

normMethod: Accessors for the 'normMethod' slot of a ABSDataSet object.

Description

Accessor functions for the 'normMethod' information in a ABSDataSet object.

Usage

"normMethod"(object)
"normMethod"(object)<-value

Arguments

object

an ABSDataSet object.

value

a character object, should be one of 'user', 'total', 'quartile' and 'geometric'. See normalFactors

Details

The 'normMethod' is the method for calculating the size factors. Currently, Four methods: 'user', 'total', 'quartile' and 'DESeq' are available.

Examples

obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups))
normMethod(obj)
normMethod(obj) <- "geometric"
normMethod(obj)