example.agff


  An ACMESet data structure from two Nimblegen arrays, custom tiled to
  include multiple HOX genes.


datasets

ACME (Algorithms for Calculating Microarray Enrichment) is
a set of tools for analysing tiling array ChIP/chip, DNAse
hypersensitivity, or other experiments that result in regions
of the genome showing "enrichment".  It does not rely on a
specific array technology (although the array should be a
"tiling" array), is very general (can be applied in experiments
resulting in regions of enrichment), and is very insensitive to
array noise or normalization methods.  It is also very fast and
can be applied on whole-genome tiling array experiments quite
easily with enough memory.

Sean Davis

ACME

Algorithms for Calculating Microarray Enrichment (ACME)

example.agff function

Format

From Scacheri et al., Plot Genet, 2006.  Pubmed ID 16604156

Source

An ACMESet data structure from two Nimblegen arrays, custom tiled to
  include multiple HOX genes.

example.agff: An example ACME data structure of class ACMESet

Description

Usage

Arguments

Format

Source

Examples