getRefflat

 The genome code from ucsc, like 'hg16', 'mm6', etc.

genome


  Fetches the refflat table from ucsc, stores in temp dir and then
  gunzips it and reads it in.


ACME (Algorithms for Calculating Microarray Enrichment) is
a set of tools for analysing tiling array ChIP/chip, DNAse
hypersensitivity, or other experiments that result in regions
of the genome showing "enrichment".  It does not rely on a
specific array technology (although the array should be a
"tiling" array), is very general (can be applied in experiments
resulting in regions of enrichment), and is very insensitive to
array noise or normalization methods.  It is also very fast and
can be applied on whole-genome tiling array experiments quite
easily with enough memory.

Sean Davis

ACME

Algorithms for Calculating Microarray Enrichment (ACME)

getRefflat function

The genome code from ucsc, like 'hg16', 'mm6', etc.

Fetches the refflat table from ucsc, stores in temp dir and then
  gunzips it and reads it in.

getRefflat: Get the refflat table from ucsc for the given genome

Description

Usage

Arguments

Value

References

See Also

Examples