plot.SnpNmfFit

SnpNmfFit.plot

plot,SnpNmfFit-method

Generates a multi-panel plot summarizing the NMF SNP fit.

methods

internal

A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).

Henrik Bengtsson

ACNE

Affymetrix SNP Probe-Summarization using Non-Negative Matrix
Factorization

Maria Ortiz

Angel Rubio

plot.SnpNmfFit function

<dl> <dt>lim, cnLim, epsLim</dt>
<dd>The plot ranges for the probe data,
 the CN estimates, and the probe-affinity estimates.</dd> <dt>main</dt>
<dd>A <code><a href="/link/character?package=ACNE&version=0.9.1" data-mini-rdoc="ACNE::character">character</a></code> string to be the main title of the plot.</dd> <dt>...</dt>
<dd>Not used.</dd></dl>

Arguments

Generates a multi-panel plot summarizing the NMF SNP fit — plot.SnpNmfFit

<dl>

 <dt>lim, cnLim, epsLim</dt>
<dd>The plot ranges for the probe data,
 the CN estimates, and the probe-affinity estimates.</dd>

 <dt>main</dt>
<dd>A <code><a href='https://rdrr.io/r/base/character.html'>character</a></code> string to be the main title of the plot.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

</dl>

plot.SnpNmfFit: Generates a multi-panel plot summarizing the NMF SNP fit

Description

Usage

Value

Arguments

See Also